Cocoanlab Github Repository: Cocoan lab code repositories



    Neuromarkers


    Tonic Pain Signature (ToPS): A neuroimaging biomarker for sustained experimental and clinical pain (from Lee et al., 2020, Nature Medicine. Model, codes, data, and supplementary materials are available to download.

    Neuroimaging analyses


    RSA tutorial: Slides, codes, and data for a tutorial session at 2019 KHBM summer school

    Bayes Factor Calculator for Bayesian MANOVA: This is designed for a specific type of data--x, y, z, and group information. We made this for fMRI data to test whether two conditions or studies activate same or different peak locations.

    CocoPrep: Codes for preprocessing human fmri data collected in the cocoanlab (Matlab)

    CocoanCore: Some important data and functions for fMRI analyses

    Experiments codes


    DS8R matlab API: A matlab API and example code to deliver electric shocks through Digitimer DS8R

    Cocoan Experiment Master Code: A psychtoolbox code template for running experiments

    Publications


    Matthewson, G., Woo, C.-W., Reddan, M. C., & Wager, T. D. (2019). Cognitive self-regulation influences pain-related physiology. Pain. Code | Paper | Video abstract

    Hong, Y., Yoo, Y., Han, J. Wager, T. D., & Woo, C.-W. 2019, False-positive neuroimaging: Undisclosed flexibility in testing spatial hypotheses allows presenting anything as a replicated finding. NeuroImage Code | Paper

    Woo, C.-W. & Wager, T. D. 2015, What reliability can and cannot tell us about pain report and pain neuroimaging. PAIN. Code | Paper

    Woo et al. 2014, Cluster-extent based thresholding in fMRI analyses: Pitfalls and recommendations. NeuroImage. Code | Paper